PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011636-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 256aa    MW: 28117.2 Da    PI: 7.0588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011636-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08167207954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  NNU_011636-RA 167 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 207
                    699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14162218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6168207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-6181212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDIDLLKYAT EDQLEMMMMM TMHMENLPEF CGTYPDASEL PSTMELPCGN AGTSFGATPP  60
TMSNPPVTSS HAWMNPSSSS ISLMGAPTEQ LAAPTLLSNN SVTESIRDTN ELLSSASALQ  120
KRNSMAAMRE MIFRIAAMQP IHIDPESVKP PKRRNVKISK DPQSVAARHR RERISERIRI  180
LQRLVPGGTK MDTASMLDEA VHYVKFLKTQ VQSLERAAAN SPAALGYLAA VSNTNYSPLA  240
NAYQSVQMFN SSQMLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263522.10.0PREDICTED: transcription factor HEC1-like
SwissprotQ9FHA79e-50HEC1_ARATH; Transcription factor HEC1
TrEMBLE0CPU43e-89E0CPU4_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g10400.t018e-89(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.19e-44bHLH family protein